PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G184800.1
Common NameB456_004G184800, LOC105791930
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 677aa    MW: 73770 Da    PI: 5.3301
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G184800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12501546454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Gorai.004G184800.1 501 NHVEAERQRREKLNQKFYALRAVVPNV-----SKMDKASLLGDAISYINEL 546
                         799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-5882263IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.25497546IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.16E-15500551No hitNo description
SuperFamilySSF474598.37E-19500569IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-10501546IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-19501568IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-17503552IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MTDYQLAPTM NLWTDDNASV MEAFMTSDLS SIWPPPQSSA STSTPVVAAA PPPPPPPAGL  60
DPSKSFLPHS QPSVSLLNQE SLQQRLQALI EGARESWTYA IFWQSSYDCS ATTVLGWGDG  120
YYKGEEDKGK AKLKAPSSSV AEQEHRKKVL RELNSLISGS AAPTDDAVDE EVTDTEWFFL  180
VSMTQSFVDG SGLPGQAFFN SSPVWVAGPD RLESSMCERA KQAQVFGLQT LVCIPSANGV  240
VELGSTELIT QSSDIMNKVR VLFNFNIEIE AGSWCMSNNT ADQGENDPSS LWISDPHAGV  300
EFKESSNTTT TTTTNHTSNQ NQQTQKSIQF CDNRSSSSLT ENPSSIPAGN HHQQQQSHQQ  360
GQSLCLNFSD YGFDESSSVR NGNSSSHLLK PESGEILNFG ESKRSGNGNL FTGNSPFAVE  420
NKKRSPNSRG SNEEAMLSFT SGVILPSSGV VKSSGGAGDS DHSDLEASVV KEADSSRVVE  480
PEKRPRKRGR KPANGREEPL NHVEAERQRR EKLNQKFYAL RAVVPNVSKM DKASLLGDAI  540
SYINELKSKL QSADSEKEEM QSQLEALKKN LSSKAPPPHD QDLKISNHTG DKLIDLEIEV  600
KIIGWDAMIQ IQCSKKNHPA AKLMAALKEL DLDVHHASVS VVKDLMIQQA NVKMGSRFFT  660
QEQLKSALTT KLGDAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-77772664195Transcription factor MYC3
4rqw_B5e-77772664195Transcription factor MYC3
4rs9_A5e-77772664195Transcription factor MYC3
4yz6_A5e-77772664195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1482490KRPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3585400.0FJ358540.1 Gossypium hirsutum bHLH domain protein (bHLH1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475688.10.0PREDICTED: transcription factor MYC2-like
SwissprotQ392040.0MYC2_ARATH; Transcription factor MYC2
TrEMBLA0A0D2PEB60.0A0A0D2PEB6_G
STRINGVIT_02s0012g01320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12652896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.10.0bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]